PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26575.4 Da    PI: 10.2442
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34.1e-231764249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + +n+ n qvtfskRr g++KKA+EL++LC+aev +i+fs+++k++ +
  XP_004496858.1 17 KMSNENNLQVTFSKRRSGLFKKASELCTLCGAEVVLIVFSPSDKVFSF 64
                    679*****************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-34867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.399868IPR002100Transcription factor, MADS-box
CDDcd002653.51E-36977No hitNo description
SuperFamilySSF554551.7E-28985IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-201030IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTGRKSRGR QKIEMKKMSN ENNLQVTFSK RRSGLFKKAS ELCTLCGAEV VLIVFSPSDK  60
VFSFGHPNVD SVIGRYLSRV PLQHNGTMQF IETHRNANVR GLNETLTQVN NQLDIEKKHG  120
DELSHLRKTI EAQFWWACPI DVMNRAQLEL FKKALQELKK LVAQHADRIV IQGAPTQTIP  180
FFVGNAATSN NPFHPHQQQV QMYPPQFFQN PMMQPHWFGF NNMEGGYGST GLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-16976168Myocyte-specific enhancer factor 2A
3kov_B2e-16976168Myocyte-specific enhancer factor 2A
3kov_I2e-16976168Myocyte-specific enhancer factor 2A
3kov_J2e-16976168Myocyte-specific enhancer factor 2A
3p57_A2e-16976168Myocyte-specific enhancer factor 2A
3p57_B2e-16976168Myocyte-specific enhancer factor 2A
3p57_C2e-16976168Myocyte-specific enhancer factor 2A
3p57_D2e-16976168Myocyte-specific enhancer factor 2A
3p57_I2e-16976168Myocyte-specific enhancer factor 2A
3p57_J2e-16976168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496858.11e-177PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-62AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7L6X51e-125G7L6X5_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA20G27330.14e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-63AGAMOUS-like 62